rs48922139 SNP Detail

Summary

• ID
  rs48922139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52168576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACTGCAG TCCATATTAG
  GGTTCCGGAG ACCATCTGTT TCCCTCCTCA GTGCCCTGCC ATTTATTCTA ACCCAGAACC
  AAGTGTTCAT CAAAATGTTT CAGAAAAGCG GACTGACACA TGCCTGGAGA CAACATCACC
  CTGTCCTCCT GGGGACGCCA AGTGTGATAC AGGTGAATGG AAGGTCCCGG AGTCACCCTC
  Y
  CATGACAAAC GTGTTCCACA CCAAAACCAG AATTGGACCG TCTTGCTTGA ACCAGACTTG
  GGCTAAGAGT CTCTCACAAA TGGGACTCCT GTTTGGCTAT GTCTATCACC TCCTATCTGC
  CTGTTGGAAT CTCAGTCTCA CCGTTACTCA TAACTCAGAA ACTTATTTCG CTCACACAGG
  AACTTGGTTT GCCCGTACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60410260	NES15916408	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48922139					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410260	NES15916408	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52168576 () rs orientation: forward

Symbol	Name	Function Class
Rr397665	regulatory region 397665	1232 bp upstream
Rr576485	regulatory region 576485	1199 bp proximal
Rr576486	regulatory region 576486	1425 bp proximal