rs48921823 SNP Detail

Summary

• ID
  rs48921823
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127648227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGTCTTC CCCCTTCTCC
  TCCTTCTTTT CCTCCTCCTC AGAATCCGGG AGTGTCCTGC ATTCCAAAGC CCAAATTTGC
  TGGGCACCAG ATGGGTCCCA ATTGTTGATA TTTTCTTTCT GCTGTTGTTT CCCCATGTTT
  GTCTCTAATT TTACTAATCT GGATCTTCTC TCTCCACCTT TTAGTTAATC TGACTAGATG
  Y
  TTATCAAGCT TACTGATTTT TTTTCAACCA ACCATTTGTT TCATCGATTG TCTCTAGTTT
  ATTGATTTCA GCCCCAAGTT TGATTATTTC TTGCTGTCTG CTCCTTGAGG ATGCGATTTC
  TACTTTTTGT TCTAGAGTTT TCAAGCATGC TATTAAGTTA CTAATATGAG ATCTCTCCAA
  TATTTTTTTA TAAGCACTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135873164	ENSMUSSNP47849	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320957521	CHEV_3_127557496	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48921823					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127648227 () rs orientation: forward

Symbol	Name	Function Class
Rr584884	regulatory region 584884	1279 bp distal
Rr584885	regulatory region 584885	409 bp distal
Rr584886	regulatory region 584886	1045 bp distal