rs48921404 SNP Detail

Summary

• ID
  rs48921404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18418505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCTGGG CTTCATTCCC
  AACCACTATC TATTAAACCC TCTCGGGCTT AGATGTCCTA ATCATAAAAT AAAGAGGTCA
  AAATGGAAGA TTAAATGCCC ACTACAGAGC TAAGAGAATT TACTATTTAA ACAGCTTAAG
  CAGACTGGGT TGTCAATCAT TCTGTAAAAT CTCAGATCAA AACATTGATC TTATCTTTTT
  R
  AAAAGAAGAG GATGCAGAAG AGTCCTATTC TGGGAGAAAG AGGCCATATT CCCATTACTC
  AACAGTGAAG GAACATTTAT GGCTGTCAGG GTCTGAGGGA TCAATGGAAA TACCATCATT
  GATGATCAAA ACCCTGGGAC TAAGAACACC TCATATTGAA GAGACTGCAG CATTAGCATC
  CTTCACTGAA GGCTAGCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133034553	ENSMUSSNP69329	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48921404					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18418505 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Rr379006	regulatory region 379006			within coordinates
Rr626921	regulatory region 626921			102 bp distal