rs48913121 SNP Detail

Summary

• ID
  rs48913121
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40755040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCG GAGGGGAGCG CCTTGTACCC
  S
  GCAGGTGTGT CTCCAGCTGC GGGCC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60400511	NES15892876	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48913121					SNP	C	C	C	C	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60400511	NES15892876	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40755040 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13112	CpG island 13112			within coordinates
Plk4	polo like kinase 4			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr397650	regulatory region 397650			1922 bp downstream
Rr575856	regulatory region 575856			1594 bp distal
Rr575857	regulatory region 575857			1918 bp distal
Rr575858	regulatory region 575858			341 bp distal
Rr575859	regulatory region 575859			475 bp distal
Tssr28972	transcription start site region 28972			555 bp downstream
Tssr28973	transcription start site region 28973			537 bp downstream
Tssr28974	transcription start site region 28974			173 bp upstream