rs48911713 SNP Detail

Summary

• ID
  rs48911713
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:24374012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGTGTT TTGATTGGTG
  AAACAGTTGT TCTACTCACA AACATTGTTA AGTTGCATGT ATGGACTTAA AGGAGTTTAA
  ACACATATTG TCCAGCCAAC AATCTGTTTA AAGATCAGCT TGACTGCAAA TCAGACATAT
  AAGCCTCTCA TCTGCCGTTT CTCCAAATGT GCAATGAGAA GATTCCACCA GGATTTCCAT
  W
  GCCCTAACAT TGTGTGACTT TAATCATCAT GGGAAAAGTG AAAGTTTGTC ATTTGTCTTT
  CTGTCATTTG TCTCAGAGTC ATCGAACCAT TTTGACTGAT GGTTTTAAAC GCCTCACATA
  TGTAATGGAT GTGAGCTCTG CTTTCTCAAT TGTTGATATC ACTTTTTGTG GTGTAGGTAT
  ATATTGCTGT ACCAAGAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60379293	NES15878055	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48911713					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60379293	NES15878055	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:24374012 () rs orientation: forward

Symbol	Name	Function Class
Naaladl2	N-acetylated alpha-linked acidic dipeptidase-like 2	Intron
Rr574259	regulatory region 574259	1841 bp proximal