rs48909901 SNP Detail

Summary

• ID
  rs48909901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153265068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTAGCCA CTTCAAAGTT ATGCCTTCTA TTCTGGTACC
  ATCCCCCACA GGCCACTTGA TCGACCTGGA AGGGCACTAG ATGCCTCCTC TGGAAGGATA
  R
  GCTGCTCTTC ATCAGACACC ATGCCAGCAG TCACTCACTG CATTTACCAC AGGCACCAAG
  GCCAGCTACA GTGTCATACC CTGCATGGGG ACAGAGAAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147993405	ENSMUSSNP1369243	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48909901					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153265068 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nol4l	nucleolar protein 4-like			Intron
				Noncoding-Transcript-Variant
Rr567634	regulatory region 567634			720 bp distal
Rr567635	regulatory region 567635			within coordinates
Rr567636	regulatory region 567636			1436 bp proximal
Tssr699	transcription start site region 699			1545 bp downstream