rs48907796 SNP Detail

Summary

• ID
  rs48907796
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148986316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATACTAAA CATTCTTCTC
  TCTTCTTTTC ATGGCGTTTC TCGAAGAGTT TGGGACCAAG GAGCGGAGAA TGGATCTTGG
  AACAGGTACG CGCGGTGGGA ACCCACGGGG AGGCTCTTTC ACTTTTCTTT CGGTTCTTTG
  ACGGAAGTTA GTATTTTTAG CCCAATGAGC TAGCAGCTGA GCCGAGGGTA CCGGACAGGC
  R
  CCAGGGGTCT GTGCCCATAG TCCCTGCTAG CCCTGTTTTC TGGATGGTGA CATTGTTATT
  TGTCATTCGC ATAGTGACTG TGACTAATTT GATGCTTGTC ATTATGAAAG AACTGAGGGG
  ACAGGGAGCT GGGGGCACCC AGAGAGAGAG AGAGAGTGGA GGATTTAGGG GTTTTTTGTG
  GGGGATTTTG TTCTGCGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321423645	CHEV_4_148275968	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48907796					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148986316 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Cpgi15314	CpG island 15314	within coordinates
Rr604790	regulatory region 604790	1100 bp distal
Rr604791	regulatory region 604791	1216 bp proximal
Tssr40309	transcription start site region 40309	657 bp downstream
Tssr40310	transcription start site region 40310	548 bp downstream