rs48903968 SNP Detail

Summary

• ID
  rs48903968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122206249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTTGCTA TATTCTTGAG
  GTACACTTTA AAATGCTGGG TTCAAGTTAG CATCCTGCCT ATGCCTGCCA AGTAGATGGA
  ATTACAGATA TGTGCTAGAT AGCCCCTAGA TAGCCCTGGA CAGTCCTGGA TAGCCCTGGA
  TAGCCCCTGG TCTGAGAAGG CAATGCTTTT CTGTCTTCTT TGCTTTTCAC TTCGTGCTTC
  R
  TGACTGACTC TCCTCACTGC ACTCTCATCG GCTGCAGTCC GAGCCAGTGT GCAGATGAAC
  TGTAATTTCA TCATTGCAGA CATTGAATGC AATGAAGCTG CTGTCAATCA CTGCAAATTC
  AAACCTTAGT GTTTTCAGGT AAGGGGACAC TTCAATTTCG CTCTTGAGTG CCTACCTCTA
  CACAGATCAG GGGTGTTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60442585	NES15946495	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	A	G	G	G	A	G	G	G	G	A
ss135741080	ENSMUSSNP2897936	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48903968					SNP	G	G	A	G	A	G	A	G	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60442585	NES15946495	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122206249 () rs orientation: forward

Symbol	Name	Function Class
Rr584323	regulatory region 584323	705 bp distal
Rr584324	regulatory region 584324	1142 bp proximal