rs48900589 SNP Detail

Summary

• ID
  rs48900589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCACTT GTGTGACCTT
  AGACTCTCAA GGACTCCTTT TCCCTGTTTG TGGAATAGAG ACACTCGGGT CCTGCCTGTA
  TGCTCTTGGG GAGTATCTTG TGCTGCCCCA CCATCATGAA CTCAGATCAG GATTTCCCAG
  TAGCCTGTGT GTGCAGTTGC TCAGAGCAGA AAAGGGGAAA GAAAGCGCTT GGAGGTAGAG
  Y
  AGTGTTGAGA GGGGAGTGCA GGTGGGTTTA CTCTATCCTC CCATCGCCTG TTGGGGGAGG
  GCATACTCGG CCTTATATGG AGGTGGGTGG CAATTTTTAG GAGTATCTCC TTCTATGGAT
  TTCAGGAAAT AAACTCTGGT CCTAGTGCTT GAACAGTAAA CAGCTCTGTC ATTCTGTTGG
  GCCCCAGGCC ACTCTTCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147115234	ENSMUSSNP1203756	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320438735	CHEV_2_102389489	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48900589					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379677 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	434 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	680 bp upstream
Rr561703	regulatory region 561703	299 bp proximal
Rr561704	regulatory region 561704	1571 bp proximal
Tssr19094	transcription start site region 19094	713 bp upstream
Tssr19095	transcription start site region 19095	767 bp upstream
Tssr19096	transcription start site region 19096	785 bp upstream
Tssr19097	transcription start site region 19097	806 bp upstream