rs48898813 SNP Detail

Summary

• ID
  rs48898813
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48174295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTT TTACATCATT TATTTATTTG
  K
  GGGGGGGGGC ATGGCTCAAG TGTGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145710396	ENSMUSSNP784935	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss325406949	CHEV_17_48000319	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48898813					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48174295 () rs orientation: forward

Symbol	Name	Function Class
Rr392692	regulatory region 392692	391 bp downstream
Rr528160	regulatory region 528160	within coordinates
Rr528161	regulatory region 528161	1315 bp proximal
Tssr145062	transcription start site region 145062	1083 bp downstream