rs48898606 SNP Detail

Summary

• ID
  rs48898606
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:9464316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCATAAAG TCTTTTGGAT
  GCTATTTCAC AACTCTAGTT CTGATAGTGA CAAATCATGA TGTAAATATA GGATATACAG
  GATGTCTGAT TTGTGACCCC AAAGAGATCT TGGCCCAAGG TTGGGAACTG TCTAGAGCCA
  AGCTCTGGAA TCCAGGCCTC AGGCTTCTGT CCTGCTAAGA TGCCCTTATG TTGTAAGCTG
  Y
  TTCAAAGCAG TTAAGTAGGA AATTATTTAA GCTTTTTAAA AAGCATTTAT TTTGTGTGAG
  GTGGGGTGGG GCAGGGCGTG TGCACATGTG AAGGTCAGAG GACAACAGTG CTTCCCTCCA
  TCCACCACGC AAGCCCTGGG CATCAGACTC AGGCCACCGG GCTCCTTTAT CTGACAATCC
  ATCTCATGGG CCAGGGAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60369252	NES15871166	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48898606					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60369252	NES15871166	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:9464316 () rs orientation: forward

Symbol	Name	Function Class
Rr374488	regulatory region 374488	within coordinates
Rr573417	regulatory region 573417	719 bp distal
Rr573418	regulatory region 573418	884 bp proximal
Rr573419	regulatory region 573419	1095 bp proximal