rs48897929 SNP Detail

Summary

• ID
  rs48897929
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:26694208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG CCGGTGACCT TGAAACGACC
  T
  CCCGGTGGTC TCAACTCACT GCAAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss134696979	ENSMUSSNP5908546	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320687955	CHEV_3_26538981	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48897929					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26694208 () rs orientation: forward

Symbol	Name	Function Class
Gm65438	predicted gene, 65438	within coordinates
Rr574324	regulatory region 574324	613 bp distal
Rr574325	regulatory region 574325	506 bp distal
Rr574326	regulatory region 574326	97 bp proximal
Spata16	spermatogenesis associated 16	Intron