rs48897520 SNP Detail

Summary

• ID
  rs48897520
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:27920766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCTACA GTGCCCGGCT
  CCCAGTTCCC AGTTAGAACC AGGAGCTGCC TAAGACGGCC TCTCACACGG AGGATGCAGG
  GAATCAATCC ACTAGAGCAG GTCCTCTTGA ATTCAACTTG GAACAGTACT AGGGCTTCAG
  GTCCTTCTGT GGGGCCACCC CTGCCTCTGC TGTGGCATGT GTCCTCTCTC AAGTCAGTCG
  T
  GTGTCCTTCC AGGAGCACTG GATACCCGGA CTGCCGGTTG GTATGCATTT TTCCTTTGCA
  GAGTCTGACT GTGGGTTTTT CTCAAGCTGT CTTCAAGGAA GTGGAGCGTC CTTGGTAGCT
  TGGGAACCCT TAGGGTGTCC CACCATCATG GTGGAAAGGA ACAAGGTCCT GGGCCTGCCT
  CCCCCACCCT ATCCCTTCCC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss146392186	ENSMUSSNP4882646	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs48897520					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:27920766 () rs orientation: forward

Symbol	Name	Function Class
Col5a1	collagen, type V, alpha 1	Intron
Gm13372	predicted gene 13372	within coordinates
Rr553711	regulatory region 553711	1035 bp proximal
Rr553712	regulatory region 553712	1363 bp proximal
Tssr16891	transcription start site region 16891	1301 bp upstream
Tssr16892	transcription start site region 16892	1333 bp upstream