rs48896982 SNP Detail

Summary

• ID
  rs48896982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:15791003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTTTATT CAAATACTTA TTTTCATTAA
  AACTAGAGGA CTTTTTCACA TTTGTTTTGT CCTGACTATA AGAGGCATTA TTACCAAAGT
  ATGCAGACTG CTTACAAACA AAACAATGCT TTCTTAATAA ATGCTATATT TATTTACTTA
  Y
  GGGGCAgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtTg cacttgtgaa
  gtgcaaaact tatcagagtc agttctctct taccacatgg gtcctgggaa tcaaacttag
  gtcacctacc ttggtggcaa gtacctttac                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss133007026	ENSMUSSNP201413	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321752330	CHEV_6_15741004	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48896982					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:15791003 () rs orientation: forward

Symbol	Name	Function Class
Mdfic	MyoD family inhibitor domain containing	Intron
Rr399575	regulatory region 399575	540 bp downstream
Rr626687	regulatory region 626687	448 bp distal
Rr626688	regulatory region 626688	688 bp distal
Rr626689	regulatory region 626689	1605 bp proximal