rs48896888 SNP Detail

Summary

• ID
  rs48896888
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147515162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AGACAACCAT TTCTCCAAAA TATCATCCCT CATGTAATCT
  GGAAAATTCT AGTATACTGT ATAACCTAAA GGTAGGTCAG TATGTCAGAG AGTATCCTTT
  C
  CTGTTATATC CCTTGGTCTC AGCCTCTTCC AGATGGCTCA GTTTATATGA GAGTCTTTTA
  AGCAGCTTGA TTGGTCTCTG TGTCTCTCAG GTGGCCTGGC T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147959795	ENSMUSSNP4406637	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48896888					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147515162 () rs orientation: forward

Symbol	Name	Function Class
Rr398814	regulatory region 398814	1635 bp downstream
Rr398815	regulatory region 398815	1194 bp downstream
Rr398816	regulatory region 398816	288 bp downstream
Rr398817	regulatory region 398817	284 bp upstream
Rr604487	regulatory region 604487	1450 bp proximal