rs48896801 SNP Detail

Summary

• ID
  rs48896801
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121996646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATATTCCA AATATAAATG
  TAATAGGTAT GCAATAGGTA TGCAGTGAAG GTTGCTGGTT GGGAGAGCTT TGACACTGGA
  TCCTCTGAAG GGGATTCTGT ATTCTGGAGG ATGGACTCTG CTGAAGCACA GAGTCTGGAG
  CGGATGGAGC GGTCTGGGCT GCGGGAGCTC CTAGCAGGAC AGAACCTACA CTTGTTAACA
  S
  ACGTCCAGGG GATGTTTGGG TGCAGGCCAC AGTGCTGTTT ACCCTGAAAT ACCAATTCTA
  CCATGCTAGA GAGCCGAACC CACTTGGATT AATGTAGTCT AGGTTCTTGC CATCAATGAT
  TAAATATACT GATAAATATT TTGTATTAGC CAATACAACC AAGCCTGTAC GTCCACTTTT
  TGAAACTGCA TACCAGAAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135736985	ENSMUSSNP3331623	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss320909564	CHEV_3_121905915	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48896801					SNP	C	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121996646 () rs orientation: forward

Symbol	Name	Function Class
D3Jor1	DNA segment, Chr 3, Barbara Jordan 1	849 bp proximal
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	217 bp distal
Rr584258	regulatory region 584258	627 bp proximal