rs48896466 SNP Detail

Summary

• ID
  rs48896466
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154912176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACA ATCAGACACT CAAAAGTCTA
  T
  TCCTCCCGGT TTCAGATACT GCCCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148106892	ENSMUSSNP1611778	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48896466					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154912176 () rs orientation: forward

Symbol	Name	Function Class
Rr606270	regulatory region 606270	1179 bp distal
Rr606271	regulatory region 606271	1748 bp distal
Rr606272	regulatory region 606272	1651 bp distal
Rr606273	regulatory region 606273	70 bp distal
Rr606274	regulatory region 606274	1810 bp proximal