rs48896003 SNP Detail

Summary

• ID
  rs48896003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:76868731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTCTTAGG CCGGGCGGTC
  ACCTCTGTGC TCGATCAGAT CAAGCAATCT GCTGTGAGCT GAGACCCGGT CAAGCGCTGG
  ACGGGTAGGG GGCTCGTAAA GGGGCTCAGG CGGGCTGCGG GGCCCAGGGG TTGGGTGAAG
  AGGAGACGGG ATGGAAGGGG GCGGGGAAGA AGGGACTTAT TGGAGAGGCG GACAGAGAGG
  R
  TCGGCTTGAG GAGGAAGCAC AGGAGCCCGA ACACTGGGCG AGCGTACTGA AGGGGGCCTG
  GAGTCTAGAG ATGTAGGTTC TTAGGGCACA GGCTAGCAGA CGCGCCACCG GTCGTCCGCT
  CCTCAGGGAA CCACAAGACC CACCCGGTAG TAAATCTCCA AGTGTAGAGG GCGCGTGCAT
  GAACCCCCTG TGGAAGTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52375994	NES15271673	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48896003					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52375994	NES15271673	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:76868731 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1753	CpG island 1753			within coordinates
Rr434376	regulatory region 434376			203 bp distal
Rr434377	regulatory region 434377			223 bp distal
Rr434378	regulatory region 434378			within coordinates
Rr434379	regulatory region 434379			99 bp proximal
Rr434380	regulatory region 434380			246 bp proximal
Rr434381	regulatory region 434381			382 bp proximal
Slc19a1	solute carrier family 19 (folate transporter), member 1			Intron
				Noncoding-Transcript-Variant
Tssr94203	transcription start site region 94203			642 bp downstream
Tssr94204	transcription start site region 94204			620 bp downstream
Tssr94205	transcription start site region 94205			150 bp downstream
Tssr94206	transcription start site region 94206			343 bp upstream
Tssr94207	transcription start site region 94207			363 bp upstream
Tssr94208	transcription start site region 94208			393 bp upstream
Tssr94209	transcription start site region 94209			407 bp upstream