rs48889783 SNP Detail

Summary

• ID
  rs48889783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:63807629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAGTTAA TTGTCAGTTC
  ACCCGCTAGC GGGCTGGAAA AGCTAATGTG CTGTTAAAGA GCACACAGGC GGCAGCGGAA
  CGTTTGCACC CAGCAAGTGT TCAAAAGCTG AGTAAAGATG AGATCTGAGC GCACTAACAG
  TAGAAAGGGA ATAGCGTGCT GCGGAGTGAT CCGGCTTCAA GATTCCAGGA CTTGGCTTTT
  R
  TCAGTCTTGA TTCAACCTGT CCTATTGTTA GTTCAAAGCC TAACTGGGAG GAACTGAGGA
  CAAGACCCTC CGTGTACCAT TCAAAGTAAA ACTTCCCTCC AGTAAGAAAG TCAGGAGCTC
  TGGCATGGCA ACATGGAATT AGCAGGGGTT GTCTGGGCCT GGTGACAACA TAAACAAAAG
  TCTTTTTTTC TTCCATGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60416428	NES15918985	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48889783					SNP	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60416428	NES15918985	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:63807629 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13219	CpG island 13219	953 bp distal
Plch1	phospholipase C, eta 1	736 bp upstream
Rr577602	regulatory region 577602	846 bp distal
Rr577603	regulatory region 577603	246 bp distal
Tssr33440	transcription start site region 33440	801 bp upstream
Tssr33441	transcription start site region 33441	776 bp upstream
Tssr33442	transcription start site region 33442	731 bp upstream