rs48888853 SNP Detail

Summary

• ID
  rs48888853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172197245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAC ATCCACATAG CTGAGCCAAG
  R
  TGCTCCAGGC CAGTGGCAGG TGGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148314454	ENSMUSSNP3431691	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320618306	CHEV_2_172180825	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48888853					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172197245 () rs orientation: forward

Symbol	Name	Function Class
Aurka	aurora kinase A	865 bp downstream
Fam210b	family with sequence similarity 210, member B	mRNA-UTR
Rr571655	regulatory region 571655	1543 bp distal
Rr571656	regulatory region 571656	within coordinates
Rr571657	regulatory region 571657	283 bp proximal