rs48888422 SNP Detail

Summary

• ID
  rs48888422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135837169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACTTGTC CAAGGACATA
  CAGCCAGCTG GGAGCAAAGT GACTTCCAGA GCCTCTTCTT CCCTCCCAAG GTGCTTTCTG
  TTCAGCTGGA GTCTTAGTTC TTTTTTTTTT TTTTTTTTTT TTTTTTTTGG AGTCTTAGTT
  CTAAGCCTGG ATTTTTGTAT GTTACCTGTA GCTGCCTCTG TACACTGGAT CCTGTGCTGG
  R
  TGCTTTGCGC ACAAGTCCTC ACCATACTTC TTGCCCCCAT CACTAAGCTG AACCAGGACC
  ACATAGCCCA GCCTGGCTTC AAACTCACGA TGACCTTGAA CTTGCGACCC TCCCATCCTC
  ATCTCCCAGG GCTGATGTCA CAGGTGTAGG CTACTGTGCC TGATTTATAT GGTTTGGGGA
  ACTGAACCCA GGGCTTGGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147558577	ENSMUSSNP4764173	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48888422					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135837169 () rs orientation: forward

Symbol	Name	Function Class
Rr602273	regulatory region 602273	61 bp proximal