rs48887571 SNP Detail

Summary

• ID
  rs48887571
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152592869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAGTCAAT TGTTTAAGGA
  AAAAGGAAAG GAAGAAAAAC AGCAAGAATG ACTCTATCAA TACCCAAACA GGCCTTAGGT
  AAGAAAAGTT TATATGGCCC TAGATGGTAT ATGGATATAT GTATACAAAT TAATCATCTA
  CTGATGATAA ATCCTAAAGA AGTTTATTTT AAACCAGTTC TTTAGCATTG ATATAATTTT
  Y
  CACTTACTAA AGATGAAAGC AAATTTGGAT ATTGATCAGA TGGATCCACT TATTTATTTT
  TACATAAAGA AATCTTGGCT GAATGTTTTA TCTTGAACAT AGACCATATT CAATGTTTTT
  CAAAGCTGAT CAATATTTTG ATTTTATGTT CATCAGTGCC GAGAATGTTG CTTTGCATAG
  ATCTATAGCA TACAGGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136104411	ENSMUSSNP827569	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss321029049	CHEV_3_152550196	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48887571					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152592869 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	558 bp distal
Rr587620	regulatory region 587620	353 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron