rs48886810 SNP Detail

Summary

• ID
  rs48886810
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150523789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGAAGA TGGGTCAGGA
  GGTATAGTCA TGGCTGAGCA AACACAAGGA CTTCAGGTTA TGCACACCCA CTTAAAATGA
  CTAATTTTCT GGTATGCACC TGCAACATGA GATCTGGGAG TTCTCTGCTT CCTCATGCAG
  GAATATTATC CTCTGAACAA TGAGAGATGA GAAAGGGGCT AACTTATCAC TCACATGTAT
  S
  TAGTTTCTGT GAAAGAACCA GAAGTGCCTG TCTACTCTTT TAGGAATATT AGAACTTTCC
  CTAGTATAGG ATGGAATCAC CAACTTGGCC TGTGAAACAA GGCAGGTGAT TGCTGGGGAA
  GAAGAGATGG AGAGAGAAAA ACAAAATGAC ATGATAACAT GAAATATATT AAATGGTTGA
  TTTAGTACTT TCAGCTGAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61099726	NES16604062	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48886810					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61099726	NES16604062	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150523789 () rs orientation: forward

Symbol	Name	Function Class
Rr587375	regulatory region 587375	1224 bp proximal