rs48886263 SNP Detail

Summary

• ID
  rs48886263
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146127925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCTTCTG ACTCCCTGTG
  ATCTTGCCTG ACCCTTCTTG AGGTCGCTTT CTGTGTCACT GGAACCTTTC CCGTCAGCTC
  CTTGCCCGTC CCTCCGTCTG AAATGCTTCC TGTTTTCTCC TCCGGCAGCT TCACAGTTTG
  TGGTCTTGCA CTAAGCTCCT TGATCCATTT GGAATTAAAG TTTGCACAGG TGAGAGGAGG
  R
  CCCTCCTCCT CCTTCCCGGC CTGGGAATGG CCTGTCTTCT CTCCAGTGTA TATTTTTTAG
  ATCATGGTTA AATACGAGGT GACTGCAGCT GTGCGGTCTC TCTCTCTCCT CGGCCATATT
  CCAAGGCCTC CATACCTGTT GTCATGGCAC TACCCTGCTG TCTTTGTCAC CGTGGCTGCA
  TTATGTGACC TGAGATGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136044147	ENSMUSSNP6511423	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321010288	CHEV_3_146085134	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48886263					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146127925 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	1723 bp proximal
Ssx2ip	SSX family member 2 interacting protein	Intron