rs48885341 SNP Detail

Summary

• ID
  rs48885341
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148149234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCAGGCC ACTCGCACCA
  GTCCCTGGCC TCGCTCCTGG ACTCTCCTGC ACTGTCCACC ATCCCGCCAG CAGCTGCTTC
  CACAGACCCA TCACAGCCCC ACAGTTCCAA TTCCAGGCCC AGCGAGCAGC CAGCTCTCCC
  TGGGCCCGTG GAGTACCGCT GCTCCAGCTG AGGAGGACAC TGGGGAGGAG GGGGAATATC
  C
  GCTCTGAGCA CAGCCCTTAG GCCAGCCTCA CCTCTTCCTC CCCGCAGCAA CAGGTATGGC
  CTGGGTGGAT CTTTTCCCGG CTCTGATAAA CAGATTAGAG GGGTCTGGGG CCCTTCCAAA
  GGACATAATG ACAGATGACA GGACTACAAA GGGCCCTCAA CCTCCGATGC CCAGTGCTCA
  GCCATCAGGG TTGGTGCTAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147991204	ENSMUSSNP4848136	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs48885341					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148149234 () rs orientation: forward

Symbol	Name	Function Class
Gm13201	predicted gene 13201	within coordinates
Gm66468	predicted gene, 66468	within coordinates
Rr604572	regulatory region 604572	1054 bp proximal
Rr604573	regulatory region 604573	1192 bp proximal
Rr604574	regulatory region 604574	1430 bp proximal