rs48872674 SNP Detail

Summary

• ID
  rs48872674
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97859175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACACACTA ATTTAAGCCC
  TGCTACTGTC CAGATGTAGC AGCTGCGAAG AACCAGGTTC AGAAGGTCAC CATTTGGAAC
  TGCTTAAGCC AGGACAAACT TCCTGCTGTG ATTGCATGTC TGCCGGAGAA ACTGGTAGTT
  CTTTGGGGCC AGGCCTGTTC CATTACACCA GATGGAGCCG CAGTGTGGCT GGTCAGAGAG
  R
  AGCCAGAGTG TGAGCTTGTC TAAGGAGTAA GGCAATACCC AAAATAGCTG CTTCTCTTGA
  CAATAGCCAT GCCCTTGCAA CCAGAACTGT TTGTGTTGGA AGAGAGAAAT CTTAAGGCTT
  ACATTGTCTG CTATGGTAGC AGGTGGCTAC TGAGTCCTTG AAATATAGCT AGCCATAATT
  ATATTTATAA GAGTAAAATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60915309	NES16222684	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48872674					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60915309	NES16222684	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97859175 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635233	regulatory region 635233	1446 bp distal
Rr635234	regulatory region 635234	within coordinates
Rr635235	regulatory region 635235	1212 bp proximal
Tssr57900	transcription start site region 57900	1695 bp downstream
Tssr57901	transcription start site region 57901	1832 bp upstream