rs48872601 SNP Detail

Summary

• ID
  rs48872601
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117655013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTCGGGA GGAACTGTCA
  CAGAGAGTTG GCTCCAAGCT AAAGTCTCCC CTGCAAAGAT TGGAGAGCAG AGAAGTCAGA
  ATTAACAGCA CTCTGTTTTC CAGGCAATCT TCTGGGAAGG TCTGGGAAGC AGGACTAGGA
  TCCAGAGTGG CAGGGCTCAT GCTGAATGGT TTGTATCCTA CATTCCAGCC CTTGCCAAGC
  K
  GAACAGGCTG CCCACAGAAC TGCCTGTGTT ACACTTGGAC TTCTGCTCCC ATAGACAAAG
  GTGCTCTGAG AAAAAAGACA CCCTGGCTCT ACCTCTAATG CTGCTTGCTG CCTGACCCTG
  CCCCACAGAA CTCACATGTT TTCTTTGTGG CTTTTTTGCT GGGTTATAGA GTCTGGGATC
  CCCTGCCCCT GTTTCTTGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60933651	NES16203057	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	T	T		G
ss321923008	CHEV_6_117628070	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48872601					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60933651	NES16203057	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117655013 () rs orientation: forward

Symbol	Name	Function Class
1700030F04Rik	RIKEN cDNA 1700030F04 gene	1155 bp downstream
Rr637351	regulatory region 637351	1205 bp distal
Rr637352	regulatory region 637352	588 bp distal
Rr637353	regulatory region 637353	259 bp proximal