rs48871797 SNP Detail

Summary

• ID
  rs48871797
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55679058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGTAAT ACAGGAATGG
  CTAGTGTCAG TCTTCATCGC AGAAGAATAT TTGGTCTATG GGGGAGTTGT AAGAAACATG
  TAAACAACAA CAACAACAAA GACCCTACTA TTTAATGCTC AATCAAGAGA TACAGATATT
  TCCTCTGAGG GGCTTCAAAG GCAGTGCTAA ACTTTTATGC TTGTCCCTAT GTGTTTCCAG
  K
  CTTCACAGTT GCTCCCAATC CCGTTTATCA GCTTCGATTC TTTTCGAATG ACTAAAGGGT
  AAGTCATGGT TATTTGTCTA GGTCTTACTT TTAGCCCGTG GATGTAGATT AGTATTTGAT
  TTTTATAAAA TCACAAAGGA TTAATATTTT AGTAGCTCTT TCAAACCTGT TAAACATAAA
  GACCAATTTT AAAGCAAAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133214597	ENSMUSSNP7237165	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48871797					SNP	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55679058 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	1626 bp proximal
Rr631015	regulatory region 631015	769 bp distal
Rr631016	regulatory region 631016	1768 bp proximal