rs48869659 SNP Detail

Summary

• ID
  rs48869659
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78875017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCAAGTAGCC CCCTTTCTCT GTAAATGTCA TATAAACCAT
  CTATCTTTCA GACTTCGTCT TCCATGGTCC CTTTTCTAGG AATATACACA CACAAACACA
  Y
  GAAAGCAGGT GGTATTTGCT TTTTTTGAGT CTAGTTACTT CACTAGATAT AATTTATACA
  GCTCTACACA TTTTCCTGAA ACTTCATTTT TTTAAAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135365556	ENSMUSSNP1259825	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320809396	CHEV_3_78771632	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48869659					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78875017 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13272	CpG island 13272	407 bp distal
Gm9762	predicted pseudogene 9762	911 bp upstream
Gm65474	predicted gene, 65474	968 bp downstream
Gm66687	predicted gene, 66687	861 bp upstream
Rr578453	regulatory region 578453	893 bp distal
Rr578454	regulatory region 578454	392 bp distal