rs48863896 SNP Detail

Summary

• ID
  rs48863896
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116133768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAAAATA GACCACTCGG
  CATTTGATGC TCATCTGCTC ACCCGTGAGA TATTTCACGT CTTACACACC GATTAACTCC
  TTGTGCTGAG TAGACTCTGC TAGTGGCTTA CTTTATTCAT GCAAGGGCAG GCAAGACAGT
  TTCTGCGCAC AAGCACAGAG AGGACACGGA AGACACAGAT GTGTCTAATG CAACACAGCG
  K
  GAGCCACATG GGGCTGAGAA TGACTCAGGG AACCACACAA ACAGCCCAAG CCTCTATCCC
  AACCCTCTCC CCCACCTCCA CACCAAGTGC TAGGATTACA GACAGCTCGC CACCATGACA
  GCTTTTTTTG CACAGGCTGA AGGAATCTAC AATCTGGTCT TCATGCTTGC TTTGGCAAAC
  ATTTTTCTGA TTGAGCCATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss60437477	NES15945666	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs48863896					SNP	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437477	NES15945666	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116133768 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc14a	CDC14 cell division cycle 14A			Intron
				Noncoding-Transcript-Variant
Rr375620	regulatory region 375620			within coordinates
Rr583700	regulatory region 583700			1058 bp distal
Rr583701	regulatory region 583701			624 bp proximal
Rr583702	regulatory region 583702			995 bp proximal
Rr583703	regulatory region 583703			1070 bp proximal