rs48863631 SNP Detail

Summary

• ID
  rs48863631
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77001840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAAACCC CGCCCACGGT
  CCCTCCCGAG GACCTGGAGG GACCGGCGGC GGCCACTCAC TCAAGCGTTG ACCAGAATGA
  GGCCAGGAAG GGCAACATTG GTGAGGTGGG ACACGGGTGT ATGCCTCTGC TTGCCTAGCC
  AGCGGAACGC ACAAACTTCC CCGCAGAGCC GCTTAAGTCT GGCCACCCCA CAAGGGACTC
  Y
  AAACACGGAC AGCTCGCACC CCGGAACCCC AGACGCTCAA ACCCTAGAGA ATGAATGGCC
  AACATAAGCA ACACAGCACT GAAAACGCCA CCATCGCGCT ACCCTTGAGC GCTCCAGCCA
  CCGGCCGCCA CCTGCGCGTG GGCAGGGCCC GGACGCCACT GCCTCCCGGC AGACCGTACA
  GGATAAGAGG TGGCTGTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373597	NES15269438	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48863631					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373597	NES15269438	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77001840 () rs orientation: forward

Symbol	Name	Function Class
Col18a1	collagen, type XVIII, alpha 1	Intron
Cpgi1754	CpG island 1754	within coordinates
Gm67721	predicted gene, 67721	634 bp upstream
Rr384956	regulatory region 384956	1367 bp upstream
Rr434420	regulatory region 434420	532 bp proximal
Rr434421	regulatory region 434421	645 bp proximal
Tssr94211	transcription start site region 94211	613 bp upstream
Tssr98227	transcription start site region 98227	495 bp downstream
Tssr98228	transcription start site region 98228	539 bp downstream