rs48861368 SNP Detail

Summary

• ID
  rs48861368
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148049748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCAGGCA AAAACACTTA
  TACACAAAAA ATAAGTAAAT ATATATTTTT TTAAAGTTCA ATTTCCTTTT TCATTATAAT
  CAATAGACGC CAGATCTCTG CAGCCGGCTA ATGGCCTGCC TCTTCTAGAG ATAACTTCCT
  GTTTTCTTCG TTACATACCT TGGGGCTTTT AACTTTACTG TTTTGGGGAG ATTTTTTAAT
  A
  TTTATTTTCT ACCACTGGCT TCTGGGTTTG GGTGGTCAGG TGTGAAAGCC AGCCTTTACC
  ATCATCCTAG TAAAAAAAAC ACCACCAACA AAAATTATTG GTCTATTCTG TGTGTGTATG
  TGTGTGGAGG GGAGGTGGGG GTAATAATCC ATGCTTGGAC TCACTCTGTA GCCCGAGCTG
  ACAGGCCACT TCTCTTTACA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147988295	ENSMUSSNP6780340	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321416060	CHEV_4_147339400	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48861368					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148049748 () rs orientation: forward

Symbol	Name	Function Class
Gm69767	predicted gene, 69767	1592 bp upstream
Rr407044	regulatory region 407044	1014 bp distal
Rr407312	regulatory region 407312	1341 bp distal
Rr604537	regulatory region 604537	2000 bp distal
Rr604538	regulatory region 604538	1603 bp distal
Rr604539	regulatory region 604539	1102 bp distal
Rr604540	regulatory region 604540	377 bp proximal