rs48858407 SNP Detail

Summary

• ID
  rs48858407
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85520940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTGAGCT TTTGAGGGAC
  AGAGGTTTAG AAAGATTAAT GAGCTCGTCC AAGGTCACAG AGTTCTTAAG AGTCAGAGCC
  AGAGATTATA TCAACTGTCC TTGCAGGGTC TTGTGTGACA GAGGACAATG TTGGTGCTAC
  AGAGCCCAGA GAAGGCGTTG GGGAGATGGT AGATACTCAT AGGTCACCCT GATAAGGCTT
  Y
  AGCACCTCTC CAGGAGCAGC CAAAAACATG GGGGAAGAAA GAGAGAGCAT TAGTAGGTCA
  GGTCTGCACA GGACACCTCT GCGGGAGCAG GAGGGAGGAG GACACGGTTG GGGGGGTGGG
  GGAGGAGGAG GCTTGTGTGA ATTGGGGAGA AGTTCACTGC TATCTACAGC TGAGTAACTT
  CATCCTAGGG TTTTTCGATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60906501	NES15955082	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48858407					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60906501	NES15955082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85520940 () rs orientation: forward

Symbol	Name	Function Class
Rr633245	regulatory region 633245	258 bp proximal