rs48857735 SNP Detail

Summary

• ID
  rs48857735
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126453781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCTCTAG AGCTCACATG
  GGAGACCTTT GCTGTCTTTG ATCTTCTAGG CTTTTAACAT GGAAATCATT TACCAATCCT
  GTAAGTAGAT GCTAATCATA TTCTCACTGA GCCCGAGAAG TCAGTCTTCC CCTAGCCACC
  TCTCTCCTAA GTGCTAGAGG TGACCCAGGA ACACAAGCAA CTTAGCACTG ACATCAGAGC
  K
  TGGAGCTGCT GGGTCAGTTC CACAGTTTAC ACTGTGTGTA AAATCTAGCT GCCTCAGCCC
  TCCAATCTCA TGTCCACTGG CAGTTTCATG TGTCCCCTTT CTGCAATAGA ACGTCCTGGC
  TGTTTATCAC AGAGTTACCT CAACTCTTTT TGGCTCACCT TCGAGGTTGT GGTCCACAGA
  CAAACATTTC GTACTCTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135838236	ENSMUSSNP6608462	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss320947055	CHEV_3_126363050	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48857735					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126453781 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43006	predicted gene 43006			809 bp downstream
Rr397996	regulatory region 397996			1782 bp upstream
Rr584669	regulatory region 584669			1890 bp distal
Rr584670	regulatory region 584670			985 bp distal
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			1730 bp proximal