rs48855956 SNP Detail

Summary

• ID
  rs48855956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAACACC TTATAACACA
  GTTAAACAGT TCACTGACAT AAACCTGATC ACATGCCTTT GTCTGTAAAC CCTATTCTAG
  GTGAGATGGT GCAGCTGAGG CAGGGAGACC TGAAGTCACC CAGCCACTGA TTTCCCAGGA
  TTCTCCCTGG GCTTTCTGCT TGGCTTTAAG AACTATAAAT GAGTATTTAC AAAAACAAAA
  Y
  GTTGCAGCAT CTGAAGACAG GCTAGTTAAA ACAATTCTAT TGCTACATCA CCTGCACAGC
  ACAATCCAGT TGTCATGGTG TGCCACATAT GAAAAGTCCT ATTGAACAAT GCATATGCCT
  GTACTTGTGT AAGATAAATG AAAAGAAAAA AAATTGTAGA GTAAGCCAGT CCACTAGGAG
  AGATGTACAA TTTGATTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60894254	NES15959621	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48855956					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894254	NES15959621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	514 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1578 bp distal
Rr631669	regulatory region 631669	1135 bp distal
Rr631670	regulatory region 631670	584 bp distal
Rr631671	regulatory region 631671	314 bp distal
Rr631672	regulatory region 631672	411 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	594 bp upstream
Tssr1872	transcription start site region 1872	1609 bp upstream
Tssr61255	transcription start site region 61255	1645 bp upstream
Tssr61256	transcription start site region 61256	1164 bp upstream
Tssr61257	transcription start site region 61257	693 bp upstream
Tssr61258	transcription start site region 61258	588 bp upstream
Tssr61259	transcription start site region 61259	520 bp upstream