rs48849720 SNP Detail

Summary

• ID
  rs48849720
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131109221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCACTGCA TCTCAACAGC
  AGGACTGCAT CTATCAGCAG CTCTGGTGAC ACACACACGC TGACACTCAG GTACCTGGTG
  AACAAAGCTT GGTTTGCTGT CTTCCTATCT CTCAGGAGAT AAAAATGTCA GGTTGAATAT
  CATCACAGCG CTCCATCACC TCTAGACAGA ATGGCTTCAT TATCTGGAGT GAATGAAGGC
  K
  CTTTGTAAGC CCGTGACCAC AGCGATCTCT GAACAGAACA CCCTATAATC TCAGAGCTGA
  GCCCACTGTT AAAACAGGCA CGGAGGCGAC ACTGTTCCAC CCCCCAGTGT GGTGGGGATA
  GGTTGTAAAA CTCTGCCAGT GACACTAGTG GAGACTTTGA TCCACGGTCG CTGTCTAGTC
  CTCGTGCTGG GACTCGCAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61081007	NES16597782	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48849720					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61081007	NES16597782	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131109221 () rs orientation: forward

Symbol	Name	Function Class
4930534D22Rik	RIKEN cDNA 4930534D22 gene	within coordinates
Rr585332	regulatory region 585332	440 bp proximal
Rr585333	regulatory region 585333	1905 bp proximal