rs48849390 SNP Detail

Summary

• ID
  rs48849390
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148022391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCTC AACAACACAC ACCCACCCCC
  C
  ACACAGGAAA CTTACAGACC AATGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321415850	CHEV_4_147312043	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48849390					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148022391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15284	CpG island 15284	965 bp distal
Plod1	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	1167 bp upstream
Rr377387	regulatory region 377387	within coordinates
Rr604526	regulatory region 604526	677 bp distal
Rr604527	regulatory region 604527	112 bp distal
Rr604528	regulatory region 604528	123 bp proximal
Tssr40234	transcription start site region 40234	1082 bp downstream
Tssr44566	transcription start site region 44566	1201 bp upstream
Tssr44567	transcription start site region 44567	1166 bp upstream