rs48845714 SNP Detail

Summary

• ID
  rs48845714
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:134998924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCAGTAA AGCAGGGGAC
  CCAGATGTTT GTTGCGTTAA CTTTTCCCTC CTTCGCTACG CCCCAAAAGG GAGAGGCGCG
  GAGAGCAGTC AGAGAAGCGT TTCTAGGCGA AGAAGGCAGC TCCAGGGTTT ACAAACTGAG
  GAGGGCGAGA GGAATGAACC TTTTTAAGCC CGAGAGAGCG GAGAATTCAG GTTTTCTTTC
  M
  AACCAAACGG GCTTGCCTGC CGAGGTGGCA ACAGCAAACG AAAGCGGCCA AAAGGTTGCA
  TCATGTGAAA ACAGGCGCGC TAGAGAAACA AGAAAACCAG ATGGTGGTAA AACACCGGAC
  AGGAAAACCC AAGTCGGGAA TCTCTGTATT TTCCGGAAGC CTTGGGGCAT CCACCCTTCT
  TTTCGCTTTT TCTTTTCTTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147543263	ENSMUSSNP4211292	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48845714					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134998924 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	Intron
Rr398589	regulatory region 398589	1277 bp upstream
Rr601974	regulatory region 601974	1259 bp distal
Rr601975	regulatory region 601975	within coordinates
Rr601976	regulatory region 601976	44 bp proximal
Rr601977	regulatory region 601977	90 bp proximal
Rr601978	regulatory region 601978	836 bp proximal
Rr601979	regulatory region 601979	1179 bp proximal
Rr601980	regulatory region 601980	1191 bp proximal
Rr601981	regulatory region 601981	1495 bp proximal
Tssr39607	transcription start site region 39607	560 bp upstream
Tssr43972	transcription start site region 43972	445 bp upstream
Tssr43973	transcription start site region 43973	1093 bp downstream
Tssr43974	transcription start site region 43974	1121 bp downstream
Tssr43975	transcription start site region 43975	1141 bp downstream
Tssr43976	transcription start site region 43976	1168 bp downstream
Tssr43977	transcription start site region 43977	1185 bp downstream