rs48841743 SNP Detail

Summary

• ID
  rs48841743
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151794701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAATCAA CCTCCGGACA
  GAATTCTATC ATAATAAAGA TGAAAGCCTT TTCATGAGCT GCAGAGTATT GATCATTAGC
  TGCCACGAAG CTTGGCTTGC TTATTCAAGC AAAGAACCAT TTAATTCACA ATTTCCTGTT
  TGCCCAAAAC TCGTTTAAAA GTTTTGCAGC CACGAATTAA GCTTTAAAAT TTTTTAATGC
  K
  CCTGTTTAAT TTTCTGCTTG GTATGAAGTC GTCTATAATT TTCACAGGAT ATTAAGCACA
  ATCATTCCGG CAGCGCTCCA CCAGTCAGCG CCTCTCCGGG TTAGTGGAAC CTGGGCTGAT
  TTTGGTAGAA TTTGTCATCA GCCTCAATAC TCTCAGAGAC ACCAAGTGCA GTCCCCAAGG
  CTCAGAAGAG TAGCTGAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136100676	ENSMUSSNP6051798	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss321027979	CHEV_3_151752028	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48841743					SNP	T	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151794701 () rs orientation: forward

Symbol	Name	Function Class
Gm31881	predicted gene, 31881	within coordinates
Rr587443	regulatory region 587443	94 bp proximal
Rr587444	regulatory region 587444	341 bp proximal