rs48841484 SNP Detail

Summary

• ID
  rs48841484
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:32586639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CAACAACTTA GGCGAAAGTA AAGAGAGTAT AACACCAAAC
  CACTATCATG TGAGATGAGT TACAAGGGAC AGAAGCTGAG TGTTGTGGTC AGGGGCAAAA
  C
  AAAAAAAAAA AAAAAAAACC TTAAGCTAGA AAGATGTGTT CAGTAGCCAG TGTCTTCCGT
  TTCTATGGAG TGGGAAATGG ACATACCACA TTGTGGGTAG A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146162365	ENSMUSSNP2505240	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48841484					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:32586639 () rs orientation: forward

Symbol	Name	Function Class
Bach2	BTB and CNC homology, basic leucine zipper transcription factor 2	531 bp downstream
Rr398195	regulatory region 398195	1677 bp upstream
Rr590021	regulatory region 590021	within coordinates
Rr590022	regulatory region 590022	149 bp proximal
Rr590023	regulatory region 590023	694 bp proximal
Rr590024	regulatory region 590024	1018 bp proximal
Rr590025	regulatory region 590025	1602 bp proximal