rs48840122 SNP Detail

Summary

• ID
  rs48840122
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:138356400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTGATGG ACATTTAGGT
  TGAGCTTGTA TCTTGGTGGT TATGATTAAT GATGCAATAA ATAAGCCTGG GTTGGAGGTG
  CCCCTTGATA AACCAATTTC ATTTCTTTTG GTTATATACC CAGAAGTACC CAGAAGTAGG
  ACTACTGGAT CAAATATTGT GTGCTCTCTC TCTCAATATT ACCTTTTTTT TTTTTTTTTT
  K
  GTTTTTTTGA GACAGGGTTT CTCTGTATAG TCCTGGCTGT CCTGGAACTC ACTTTGTAGA
  CCAGGTTGGC CTCGAACTCA GAAATCCGCC TGCCTCTGCC TCCCAAGTAC TAGGATTAAA
  GGCATGTGCC ACCACACCCG GCTCTCTCAG CATTTCTTAA GAGAAGAAGG ATTTGTTTTG
  GCTTGGGTTC AGCAGGGTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135955794	ENSMUSSNP1652336	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48840122					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138356400 () rs orientation: forward

Symbol	Name	Function Class
Rr586176	regulatory region 586176	803 bp proximal
Rr586177	regulatory region 586177	1159 bp proximal