rs48837777 SNP Detail

Summary

• ID
  rs48837777
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57341222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTCTTCTTTC AGATGTTCAC CTCCACGTTG TTTGCTGTGA
  TTGGATTCTT AGGTGCTGGC TACTCATTTA TCGTCTCAGC TGTTTCTATC AACAAGGGTC
  C
  TAAATGCTTC ATGGCCAATG GTACATGGGG ATACCCCTTC CACGATGGGT AAGGCTCCAC
  TGGACAATGA TCATAATGGG GTGACAGCCT CTCCACCATG T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135201269	ENSMUSSNP1528295	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48837777					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57341222 () rs orientation: forward

Symbol	Name	Function Class
Rr577094	regulatory region 577094	1563 bp distal
Rr577095	regulatory region 577095	1438 bp proximal
Tm4sf4	transmembrane 4 superfamily member 4	Coding-NonSynonymous
Tssr29185	transcription start site region 29185	within coordinates