rs48837653 SNP Detail

Summary

• ID
  rs48837653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142846140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGCGCATC CTAAACAATA
  AGGAACAAAT CCACATCCGA GCTCTCCAAC ATGCAGGTCC CTACTCCCAA GAGTCAAATT
  CTCCAAGCAC TTGCATCCCA GAGGGGTTCA CTCACTGCCA GAGTCCTGCC CAGAACATGG
  GTCAAGGTGT CTGTTTTGAA CAACTCTGTG AACACATCTG AAGATTCAGA CCTCTCCCAC
  R
  GACCCCACCC CCATCCCACC TAGTGCTGCC TCTTACATTT CAGGGACATC ATCTCTGCAG
  GAACCCTGCT ACCGCTTGAG CCAGCACAGG AATGATCCCC CTGACTTTCT CCTCTCTACA
  TCTACTTCCA GGTTCTTTTT TTTCCTCCAG TTGAGTGAAA ACACACCATT TGCAATAAAG
  CTGAGAAGAG AAATAAATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147773334	ENSMUSSNP2300382	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48837653					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142846140 () rs orientation: forward

Symbol	Name	Function Class
Prdm2	PR domain containing 2, with ZNF domain	Intron
Rr604158	regulatory region 604158	345 bp distal
Rr604159	regulatory region 604159	463 bp proximal