rs48836805 SNP Detail

Summary

• ID
  rs48836805
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:94444534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGACCCACAG ATCCTCTACG GAGATCGGGG AAACCACAAG
  TAAAAGAAAC CGCGAAAGTT TAATGGGGAA GGAGTACTGA TCAGTAAATC CAGAAACTTA
  G
  AAGTTTAATA CATGGGGAAG AGTTCAAACG GACTCAGAAC GGAACCGGCG GCCCAAGGGA
  CCCCGGCACT AACAATGAGC TTCTGCCCGC GCCCGCGCG                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147049611	ENSMUSSNP5571016	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321211509	CHEV_4_94222988	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48836805					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:94444534 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Caap1	caspase activity and apoptosis inhibitor 1			Intron
				Noncoding-Transcript-Variant
Cpgi14451	CpG island 14451			within coordinates
Gm10306	predicted gene 10306			249 bp upstream
Rr595334	regulatory region 595334			916 bp distal
Rr595335	regulatory region 595335			489 bp proximal
Tssr42441	transcription start site region 42441			1211 bp upstream
Tssr42442	transcription start site region 42442			440 bp downstream