rs48830457 SNP Detail

Summary

• ID
  rs48830457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:97883610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTTCAATG GAAAATAATG
  TGTAATATCT TTTCTGTGTC CTTACAGATA GATAAGTGAA TTCTTCATAT TTTTAATACA
  AGGAATTATT CCAGAAATCA GAAATATCAC AAATTTCTCC AATAAATGGC AAATAATTTA
  GTTATCAAAC AACTTGCCAT ATGAAATATG TCATAATATA AATTATGCTA AGGTTAAAAT
  Y
  TGGCCTTACT TGAAGCCATA GAAGTAAACA CCTCCATTTA ACTCCATAAA GACCTGTTTT
  CTGAGATACC CAAATTGAGT ACAGAAACAG CTATTACTAT GTCAGTAATA ATATAGTAAT
  TTACATGCGG CAATAGAAGC CCACTAAGTA AGGCTATCTA AGTCATTGAA CAAATAGGGC
  ATAGATAGAA GGGAGTTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	MSM/Ms
ss147084237	ENSMUSSNP6379772	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	MSM/Ms
rs48830457					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:97883610 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm68490	predicted gene, 68490			within coordinates
Nfia	nuclear factor I/A			Intron
				Noncoding-Transcript-Variant
Rr595671	regulatory region 595671			1743 bp proximal
Rr595672	regulatory region 595672			1877 bp proximal