rs48826694 SNP Detail

Summary

• ID
  rs48826694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148226478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG TGCTGGGATT AAAGGTGTGT
  R
  CCACCACTGC CCGGCCTTAT TTTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147994329	ENSMUSSNP1430070	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss321417619	CHEV_4_147516130	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48826694					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148226478 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15292	CpG island 15292			958 bp distal
Mad2l2	MAD2 mitotic arrest deficient-like 2			Intron
				Noncoding-Transcript-Variant
Rr398855	regulatory region 398855			1436 bp downstream
Rr604601	regulatory region 604601			1829 bp distal
Rr604603	regulatory region 604603			1795 bp distal
Rr604604	regulatory region 604604			1268 bp distal
Tssr40254	transcription start site region 40254			1514 bp downstream
Tssr40255	transcription start site region 40255			1469 bp downstream
Tssr40256	transcription start site region 40256			1323 bp downstream
Tssr40257	transcription start site region 40257			1254 bp downstream
Tssr40258	transcription start site region 40258			1247 bp downstream
Tssr40259	transcription start site region 40259			1231 bp downstream
Tssr40260	transcription start site region 40260			1210 bp downstream
Tssr40261	transcription start site region 40261			1013 bp downstream