rs48826173 SNP Detail

Summary

• ID
  rs48826173
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121402705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTCACA ACCAGACACT
  GACAGTCTGC AAATGCTAAA GAGGCTTCGG ATTATGTTTG TTCATAAAAA CCTTTGAGGG
  GCACGGGCAA AGTCATGGTG TGGTCGGCTC TGGCTTAGGT TAAGTATTAT GAGAAAGAAG
  CACCCCACCC TGCCCCAGCA CAGCCCTTTC TCAGAACCTA TTACAGGTTA AGAATTTGCA
  R
  TACATATATT CCCATTCTTA TCCACTGCCC TATTTCTAAT TCTCCCTTAG ACACATAGAA
  TTGGTTTGGT TTACTTCCTC CTAGATCACT CTTCTGTGAG AGATTCAGGT TGTGACTACA
  ATTTGTGACT TTTTTCTTCT TCTTCTTCTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT
  TTTTGAGACA GGGTTTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147391643	ENSMUSSNP350021	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48826173					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121402705 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563850	regulatory region 563850			703 bp distal
Rr563851	regulatory region 563851			765 bp distal
Rr563852	regulatory region 563852			within coordinates
Rr563853	regulatory region 563853			247 bp distal
Rr563854	regulatory region 563854			1957 bp proximal