rs48826107 SNP Detail

Summary

• ID
  rs48826107
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18907535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGTTGCT AGTAAAGCAC
  CTCTGGAAAA TCATGCATTT ATTTCTGTAG ACAGTAGGTG GCATCTAAGT TTCACAAATA
  AACTGATGAT TCATATGCCT GTATTAGGAA ATGAATGTTT CAAACTAATC AAAAATTTAA
  TTTAAATAGT ATTTGTTATA GTTTACCTTG CTGTATTAAT TATCTAAAGG AATATACAAT
  Y
  TTCTGAAGTT TAACACAAAG ATCTTGTTAT GCTTTGAAAC ACATAACAAT GTAAGTTTAT
  TAATGCCACT TTACAAGCTG TTTAGCTGCA CCAACATAAG ATACAACATC CTGCTACCTG
  AAACTGGGCT CACCAAAGTC AGGGCTTCCA ATAGTCAGGT GAGGAGGGCA AGGGGCTTAC
  TGCACCCTAC CACTCACTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133043310	ENSMUSSNP5788453	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48826107					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18907535 () rs orientation: forward

Symbol	Name	Function Class
Rr626961	regulatory region 626961	133 bp distal