rs48820626 SNP Detail

Summary

• ID
  rs48820626
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120739850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATGGGTTGG GCCTTGGAGT GAATGAAATG GAGAGAGCAA
  GCTGAACACA GGCAAATGTG CATGCATGCA TGCAAGCAAG CAAGCATGCA TTCTCTCTCT
  Y
  CTTTACTGTG GCTGTGCTTC AAGCTCCTGC TGCCTTGGCT TCCCTGTAAT AATCTGTAAC
  CTGGAACTGT GAGCTGACAT CAACCCTAAG TTGCTTTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135710273	ENSMUSSNP2632097	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48820626					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120739850 () rs orientation: forward

Symbol	Name	Function Class
Rr583995	regulatory region 583995	712 bp proximal