rs48820005 SNP Detail

Summary

• ID
  rs48820005
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147516923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAGGGCAGT CCTCCAGTCA CAGCAATGGG TAGAGCTGAC
  AAGAAGGAGT TGAGGTGGGA ATCTAAGTTT CCCAGATATG GATGGGACAA GGGTACTAGG
  T
  AGCGGTGGAT AGAGTTAGTG GTTCAAATTG AACCTCCCTG TGATAGGGAG GCAGAAAGGG
  ACTTAGGAAG ATAGGCTGGG CATGTGTTCC TTGGCAGGT                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147960075	ENSMUSSNP2611570	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321414638	CHEV_4_146806575	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48820005					SNP	T	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147516923 () rs orientation: forward

Symbol	Name	Function Class
Rr398817	regulatory region 398817	1176 bp downstream
Rr398818	regulatory region 398818	1435 bp upstream
Rr398819	regulatory region 398819	1834 bp upstream
Rr604487	regulatory region 604487	within coordinates